Between brackets is the number of accepted species

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- Mollusca (132 754)
- Subphylum Aculifera
- Subphylum Conchifera
- Subphylum Placophora accepted as Polyplacophora
- Superclass Aplacophora
- Class Amphineura accepted as Aculifera
- Class Bivalvia (24 992)
- Subclass Autobranchia (23 278)
- Infraclass Heteroconchia (16 634)
- Subterclass Archiheterodonta (1 205)
- Subterclass Euheterodonta (11 356)
- Superorder Anomalodesmata (987)
- Superorder Imparidentia (10 336)
- Order Adapedonta (260)
- Order Cardiida (3 055)
- Superfamily Anthracosioidea Amalitzky, 1892 † (215)
- Superfamily Cardiacea accepted as Cardioidea Lamarck, 1809
- Superfamily Cardioidea Lamarck, 1809 (1 536)
- Family Adacnidae Gill, 1871 accepted as Adacnini Gill, 1871
- Family Cardiidae Lamarck, 1809 (1 526)
- Subfamily Cardiidae incertae sedis (18)
- Subfamily Cardiinae Lamarck, 1809 (88)
- Subfamily Cerastodermatinae F. Nordsieck, 1969 accepted as Cerastodermatini F. Nordsieck, 1969
- Subfamily Clinocardiinae Kafanov, 1975 (17)
- Subfamily Fraginae R. B. Stewart, 1930 (52)
- Subfamily Goethemiinae M. Huber, 2010 accepted as Lymnocardiinae Stoliczka, 1870
- Subfamily Hypaninae Starobogatov, 1970 accepted as Adacnini Gill, 1871
- Subfamily Laevicardiinae Keen, 1951 (29)
- Subfamily Lahilliinae H. J. Finlay & Marwick, 1937 † (11)
- Subfamily Lymnocardiinae Stoliczka, 1870 (950)
- Tribe Acanthocardiini Kafanov & Starobogatov, 1977 (32)
- Tribe Acobaecardiini Paramonova, 1980 † (2)
- Tribe Adacnini Gill, 1871 (153)
- Tribe Arcicardiini Nevesskaja, 1986 † (32)
- Tribe Avicardiini S. V. Popov, 1977 † (22)
- Tribe Aviculocardiini Paramonova, 2001 † (5)
- Tribe Cerastodermatini F. Nordsieck, 1969 (40)
- Genus Bessia Kojumdgieva & Sapundgieva, 1981 † (2)
- Genus Cerastoderma Poli, 1795 (32)
- Genus Korobkoviella Merklin, 1974 † (2)
- Genus Raricardium Paramonova, 1986 † (4)
- Tribe Chokrakiini S. V. Popov, 2001 † (1)
- Tribe Hyrcaniini Kafanov & Starobogatov, 1977 † accepted as Adacnini Gill, 1871
- Tribe Limnopappini Schlickum, 1962 † (17)
- Tribe Lymnocardiini Stoliczka, 1870 † (186)
- Tribe Merklinicardiini S. V. Popov, 2001 † (3)
- Tribe Obsoletiformini Paramonova, 2001 † (59)
- Tribe Pachydacnini Andreescu, 1975 † (47)
- Tribe Paradacnini Eberzin, 1965 † (26)
- Tribe Parvicardiini Kafanov & Starobogatov, 1977 (42)
- Tribe Phyllocardiini Nevesskaja, 1986 † (13)
- Tribe Planacardiini Paramonova, 2001 † (4)
- Tribe Plicatiformini Paramonova, 2001 † (7)
- Tribe Pontalmyrini Taktakischvili, 1981 † (186)
- Tribe Prosodacnini Keen, 1937 † (68)
- Genus Brachiodacna Eberzin, 1965 †
- Genus Chartadacna Chelidze, 1953 †
- Genus Didacnomya Andrusov, 1923 † accepted as Pseudocatillus Andrusov, 1903 †
- Genus Gilletella Marinescu, 1973 † (2)
- Genus Goethemia Lambiotte, 1979 (2)
- Genus Kolesnikovia Muskhelishvili, 1966 †
- Genus Myocardia Vest, 1861 † accepted as Lymnocardium Stoliczka, 1870 †
- Genus Papyrocardium Gabuniya, 1953 †
- Genus Prophyllicardium Jekelius, 1944 †
- Genus Uniocardium Capellini, 1880 † (1)
- Subfamily Nemocardiinae ter Poorten, 2023 (107)
- Subfamily Orthocardiinae J. A. Schneider, 2002 (67)
- Subfamily Pleuriocardiinae J. A. Schneider, 1995 † (3)
- Subfamily Profraginae Badve, 1977 † (6)
- Subfamily Protocardiinae Bronn, 1849 † (37)
- Subfamily Stylodacninae Papaianopol, 1987 † accepted as Prosodacnini Keen, 1937 †
- Subfamily Trachycardiinae R. B. Stewart, 1930 (120)
- Subfamily Tridacninae Lamarck, 1819 (19)
- Tribe Clinocardiini Kafanov, 1975 accepted as Clinocardiinae Kafanov, 1975
- Tribe Serripedini Kafanov, 1975 accepted as Clinocardiinae Kafanov, 1975
- Genus Cerastes Poli, 1795 accepted as Cardium (Cerastoderma) Poli, 1795
- Genus Divaricardium Dollfus & Dautzenberg, 1886 † (2)
- Genus Fuscocardium Oyama, 1973 † accepted as Clinocardium Keen, 1936
- Genus Trigonocardia [sic] accepted as Trigoniocardia Dall, 1900
- Family Chametracheidae H. Adams & A. Adams, 1857 accepted as Tridacninae Lamarck, 1819
- Family Clinocardiidae Kafanov, 1975 accepted as Clinocardiinae Kafanov, 1975
- Family Fragidae R. B. Stewart, 1930 accepted as Fraginae R. B. Stewart, 1930
- Family Goniocardiidae Scarlato & Starobogatov, 1979 † accepted as Tridacninae Lamarck, 1819
- Family Lymnocardiidae Stoliczka, 1870 accepted as Lymnocardiinae Stoliczka, 1870
- Family Pterocardiidae Scarlato & Starobogatov, 1979 † (10)
- Family Tridacnidae Lamarck, 1819 accepted as Tridacninae Lamarck, 1819
- Superfamily Tellinacea accepted as Tellinoidea Blainville, 1814
- Superfamily Tellinoidea Blainville, 1814 (1 304)
- Superfamily Tridacnoidea accepted as Tridacninae Lamarck, 1819
- Order Galeommatida (791)
- Order Gastrochaenida (43)
- Order Hiatellida represented as Adapedonta
- Order Hippuritida † (321)
- Order Lucinida (997)
- Order Megalodontida † (141)
- Order Modiomorphida † (94)
- Order Myacea accepted as Myida
- Order Myida (924)
- Order Sphaeriida (662)
- Order Venerida (2 821)
- Superfamily Cyamioidea G. O. Sars, 1878 (98)
- Superfamily Gaimardioidea Hedley, 1916 accepted as Cyamioidea G. O. Sars, 1878
- Superfamily Galeommatacea accepted as Galeommatoidea J. E. Gray, 1840
- Superfamily Grammysioidea S. A. Miller, 1877 † (90)
- Superfamily Kalenteroidea Marwick, 1953 † (39)
- Superfamily Mactracea accepted as Mactroidea Lamarck, 1809
- Order Anomalodesmacea accepted as Anomalodesmata
- Order Euheterodonta incertae sedis (27)
- Order Pholadomyida represented as Anomalodesmata
- Family Lipanellidae T. M. Sánchez, 2005 † (4)
- Family Rhaetidiidae Dominici & Danise, 2024 † (2)
- Subterclass Heterodonta
- Subterclass Palaeoheterodonta (4 072)
- Superorder Heteroconchia incertae sedis † (1)
- Infraclass Pteriomorphia (6 644)
- Subclass Bivalvia incertae sedis (7)
- Subclass Palaeotaxodonta accepted as Nuculida
- Subclass Paleoheterodonta accepted as Palaeoheterodonta
- Subclass Protobranchia (1 365)
- Infraclass Cryptodonta † (342)
- Class Caudofoveata (143)
- Class Cephalopoda (1 832)
- Class Conchifera accepted as Bivalvia
- Class Cricoconarida † (1)
- Class Gastropoda (102 679)
- Class Lamellibranchiata accepted as Bivalvia
- Class Loricata accepted as Polyplacophora
- Class Mollusca incertae sedis † (372)
- Class Monoplacophora (229)
- Class Pelecypoda accepted as Bivalvia
- Class Polyplacophora (1 377)
- Class Polyplaxiphora accepted as Polyplacophora
- Class Rostroconchia † (64)
- Class Scaphopoda (752)
- Class Solenoconchia accepted as Scaphopoda
- Class Solenogastres (313)
- Subclass Chaetodermomorpha accepted as Caudofoveata