Between brackets is the number of accepted species

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- Mollusca (132 754)
- Subphylum Aculifera
- Subphylum Conchifera
- Subphylum Placophora accepted as Polyplacophora
- Superclass Aplacophora
- Class Amphineura accepted as Aculifera
- Class Bivalvia (24 992)
- Subclass Autobranchia (23 278)
- Infraclass Heteroconchia (16 634)
- Subterclass Archiheterodonta (1 205)
- Subterclass Euheterodonta (11 356)
- Subterclass Heterodonta
- Subterclass Palaeoheterodonta (4 072)
- Order Trigoniida (1 482)
- Superfamily Megatrigonioidea van Hoepen, 1929 † (336)
- Superfamily Myophorelloidea T. Kobayashi, 1954 † (376)
- Superfamily Pseudocardinioidea Martinson, 1961 † (176)
- Superfamily Trigonioidea Lamarck, 1819 (350)
- Superfamily Trigonioidoidea L. R. Cox, 1952 † (226)
- Family Nakamuranaiadidae F.-X. Guo, 1981 † (21)
- Family Nippononaiidae J.-H. Chen, 1987 † (41)
- Family Plicatounionidae J.-H. Chen, 1987 † (27)
- Genus Equiplicatounio J.-H. Chen, 1987 † accepted as Plicatounio (Equiplicatounio) J.-H. Chen, 1987 †
- Genus Kwanmonia Ota, 1963 † accepted as Plicatounio (Kwanmonia) Ota, 1963 †
- Genus Lioplicatounio Q.-H. Ma, 1983 † accepted as Plicatounio (Plicatounio) T. Kobayashi & K. Suzuki, 1936 †
- Genus Monginella Starobogatov, 1970 † (5)
- Species Monginella flattersensis (Mongin, 1963) †
- Species Monginella ganquanensis (B.-D. Shi, 1982) †
- Species Monginella gansuensis (B.-D. Shi, 1982) †
- Species Monginella radieri (Goumard, 1956) †
- Species Monginella rostrata (F.-X. Guo & Y.-F. Zhang, 1981) †
- Genus Plicatounio T. Kobayashi & K. Suzuki, 1936 † (22)
- Genus Protounio Martinson, 1953 † accepted as Pseudohyria (Pseudohyria) MacNeil, 1936 †
- Genus Rongxiania X.-Z. Liu, 1984 † accepted as Plicatounio (Plicatounio) T. Kobayashi & K. Suzuki, 1936 †
- Family Pseudohyriidae T. Kobayashi, 1968 † (76)
- Family Sainschandiidae C. M. Kolesnikov, 1977 † accepted as Pseudohyriidae T. Kobayashi, 1968 †
- Family Sainshandiidae [sic] † accepted as Pseudohyriidae T. Kobayashi, 1968 †
- Family Trigonioididae L. R. Cox, 1952 † (56)
- Genus Blanfordinaia Starobogatov, 1970 † (1)
- Genus Indobaphia Starobogatov, 1970 † (1)
- Genus Monginellopsis V. R. Silva et al., 2020 † (1)
- Genus Repmania C. M. Kolesnikov, 1980 † accepted as Repmanigonia Ceccolini & Cianferoni, 2021 †
- Genus Repmanigonia Ceccolini & Cianferoni, 2021 † (2)
- Superfamily Trigonodoidea Modell, 1942 † (18)
- Order Unionida (2 579)
- Family Lyrodesmatidae P. Fischer, 1886 † (8)
- Family Pseudarcidae Scarlato & Starobogatov, 1979 † (3)
- Family Thoraliidae N. J. Morris, 1980 †
- Superorder Heteroconchia incertae sedis † (1)
- Infraclass Pteriomorphia (6 644)
- Subclass Bivalvia incertae sedis (7)
- Subclass Palaeotaxodonta accepted as Nuculida
- Subclass Paleoheterodonta accepted as Palaeoheterodonta
- Subclass Protobranchia (1 365)
- Infraclass Cryptodonta † (342)
- Class Caudofoveata (143)
- Class Cephalopoda (1 832)
- Class Conchifera accepted as Bivalvia
- Class Cricoconarida † (1)
- Class Gastropoda (102 679)
- Class Lamellibranchiata accepted as Bivalvia
- Class Loricata accepted as Polyplacophora
- Class Mollusca incertae sedis † (372)
- Class Monoplacophora (229)
- Class Pelecypoda accepted as Bivalvia
- Class Polyplacophora (1 377)
- Class Polyplaxiphora accepted as Polyplacophora
- Class Rostroconchia † (64)
- Class Scaphopoda (752)
- Class Solenoconchia accepted as Scaphopoda
- Class Solenogastres (313)
- Subclass Chaetodermomorpha accepted as Caudofoveata