Between brackets is the number of accepted species

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- Mollusca (132 791)
- Subphylum Aculifera
- Subphylum Conchifera
- Subphylum Placophora accepted as Polyplacophora
- Superclass Aplacophora
- Class Amphineura accepted as Aculifera
- Class Bivalvia (25 009)
- Class Caudofoveata (143)
- Class Cephalopoda (1 834)
- Subclass Coleoidea (1 137)
- Superorder Ammonoida † (78)
- Superorder Bactritoidea †
- Superorder Decabrachia represented as Decapodiformes
- Superorder Decapodiformes (715)
- Order [unassigned] Decapodiformes (2)
- Order Aulacoceratida † (18)
- Order Bathyteuthida (9)
- Order Belemnitida † (131)
- Suborder Belemnitina † (83)
- Family Belemnitidae Owen, 1838 †
- Family Hastitidae Naef, 1922 † (10)
- Family Hastitinae Naef, 1922 † accepted as Hastitidae Naef, 1922 †
- Family Megateuthidae Sachs & Nalnjaeva, 1967 † (35)
- Family Mesohibolitidae Nerodenko, 1983 † (22)
- Family Nipponoteuthidae Y. Iba, S. Sano & Mutterlose, 2014 † (1)
- Family Passaloteuthidae Naef, 1922 † (15)
- Suborder Belemnopseina † (48)
- Suborder Belemnotheutina †
- Family Phragmoteuthidae Naef, 1921 †
- Family Sinobelemnitidae Bian & Zhu, 1984 †
- Genus Chrysaor Montfort, 1808 †
- Order Diplobelida † (7)
- Order Idiosepida (8)
- Order Myopsida (48)
- Order Oegopsida (255)
- Order Palaecoleoidea † accepted as Aulacoceratida †
- Order Protobelemnoidea † accepted as Aulacoceratida †
- Order Sepiida (223)
- Order Spirulida (13)
- Order Teuthida
- Family Bayanoteuthidae Naef, 1922 †
- Family Mississaepiidae Doguzhaeva, P. G. Weaver & Ciampaglio, 2014 † (1)
- Superorder Octobrachia represented as Octopodiformes
- Superorder Octopodiformes (341)
- Order Coleoidea incertae sedis † (3)
- Subclass Endoceratia † (32)
- Subclass Multiceratia † (290)
- Subclass Nautiloida (136)
- Subclass Orthoceratia † (200)
- Subclass Plectronoceratia † (16)
- Subclass Tarphyceratia † (23)
- Class Conchifera accepted as Bivalvia
- Class Cricoconarida † (1)
- Class Gastropoda (102 697)
- Class Lamellibranchiata accepted as Bivalvia
- Class Loricata accepted as Polyplacophora
- Class Mollusca incertae sedis † (372)
- Class Monoplacophora (229)
- Class Pelecypoda accepted as Bivalvia
- Class Polyplacophora (1 377)
- Class Polyplaxiphora accepted as Polyplacophora
- Class Rostroconchia † (64)
- Class Scaphopoda (752)
- Class Solenoconchia accepted as Scaphopoda
- Class Solenogastres (313)
- Subclass Chaetodermomorpha accepted as Caudofoveata