Between brackets is the number of accepted species

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- Mollusca (132 791)
- Subphylum Aculifera
- Subphylum Conchifera
- Subphylum Placophora accepted as Polyplacophora
- Superclass Aplacophora
- Class Amphineura accepted as Aculifera
- Class Bivalvia (25 009)
- Subclass Autobranchia (23 295)
- Infraclass Heteroconchia (16 637)
- Subterclass Archiheterodonta (1 208)
- Subterclass Euheterodonta (11 356)
- Superorder Anomalodesmata (987)
- Superorder Imparidentia (10 336)
- Order Adapedonta (260)
- Order Cardiida (3 055)
- Order Galeommatida (791)
- Order Gastrochaenida (43)
- Order Hiatellida represented as Adapedonta
- Order Hippuritida † (321)
- Order Lucinida (997)
- Order Megalodontida † (141)
- Order Modiomorphida † (94)
- Order Myacea accepted as Myida
- Order Myida (924)
- Order Sphaeriida (662)
- Superfamily Sphaerioidea Deshayes, 1855 (1820) (662)
- Family Corneocycladidae Hannibal, 1912 accepted as Sphaeriidae Deshayes, 1855 (1820)
- Family Euglesidae Pirogov & Starobogatov, 1974 accepted as Sphaeriinae Deshayes, 1855 (1820)
- Family Kijidae C. M. Kolesnikov, 1977 † (21)
- Family Limnocyrenidae C. M. Kolesnikov, 1977 † (39)
- Family Neomiodontidae R. Casey, 1955 † (122)
- Family Pisidiidae Gray, 1857 accepted as Sphaeriidae Deshayes, 1855 (1820)
- Family Sibireconchidae C. M. Kolesnikov, 1977 † (3)
- Family Sphaeriidae Deshayes, 1855 (1820) (477)
- Subfamily Euglesinae Pirogov & Starobogatov, 1974 accepted as Sphaeriinae Deshayes, 1855 (1820)
- Subfamily Euperinae Heard, 1965 (43)
- Subfamily Lacustrininae Korniushin, 1989 accepted as Sphaeriinae Deshayes, 1855 (1820)
- Subfamily Musculiinae Starobogatov, 1984 accepted as Sphaeriidae Deshayes, 1855 (1820)
- Subfamily Neopisidiinae Korniushin, 1989 accepted as Sphaeriinae Deshayes, 1855 (1820)
- Subfamily Pisidiinae Gray, 1857 accepted as Sphaeriinae Deshayes, 1855 (1820)
- Subfamily Sphaeriinae Deshayes, 1855 (1820) (424)
- Tribe Sphaeriini Deshayes, 1855 (1820) accepted as Sphaeriinae Deshayes, 1855 (1820)
- Genus Afropisidium Kuiper, 1962 accepted as Euglesa (Afropisidium) Kuiper, 1962
- Genus Amesodon Agassiz, 1846 accepted as Sphaerium Scopoli, 1777
- Genus Amniciana Servain, 1888 accepted as Pisidium C. Pfeiffer, 1821
- Genus Calyculina Clessin, 1872 accepted as Musculium Link, 1807
- Genus Cingulipisidium Pirogov & Starobogatov, 1974 accepted as Euglesa (Cingulipisidium) Pirogov & Starobogatov, 1974
- Genus Clessinia Piaget, 1913 accepted as Euglesa Jenyns, 1832
- Genus Clessinicyclas Alimov & Starobogatov, 1968 accepted as Sphaerium Scopoli, 1777
- Genus Conventus Pirogov & Starobogatov, 1974 (5)
- Genus Cornea Megerle von Mühlfeld, 1811 accepted as Sphaerium Scopoli, 1777
- Genus Corneocyclas J. B. Férussac, 1818 accepted as Sphaerium Scopoli, 1777
- Genus Corneola Westerlund, 1873 accepted as Sphaerium Scopoli, 1777
- Genus Cycladea Rafinesque, 1815 accepted as Sphaerium Scopoli, 1777
- Genus Cycladites Krüger, 1823 accepted as Sphaerium Scopoli, 1777
- Genus Cyclas Lamarck, 1798 accepted as Sphaerium Scopoli, 1777
- Genus Cyclocalyx Dall, 1903 accepted as Euglesa (Euglesa) Jenyns, 1832
- Genus Cyclus Jurine, 1817 accepted as Sphaerium Scopoli, 1777
- Genus Cymatocyclas Dall, 1903 accepted as Euglesa Jenyns, 1832
- Genus Euglesa Jenyns, 1832 (90)
- Genus Galileja O. G. Costa, 1840 accepted as Euglesa Jenyns, 1832
- Genus Henslowiana Servain, 1888 accepted as Euglesa (Henslowiana) Servain, 1888
- Subgenus Henslowiana (Amuriana) Prozorova, 1996 accepted as Euglesa (Henslowiana) Servain, 1888
- Subgenus Henslowiana (Amurohenslowiana) Korniushin, 1996 accepted as Euglesa (Henslowiana) Servain, 1888
- Subgenus Henslowiana (Arcteuglesa) Pirogov & Starobogatov, 1974 accepted as Euglesa (Henslowiana) Servain, 1888
- Subgenus Henslowiana (Henslowiana) Servain, 1888 accepted as Euglesa (Henslowiana) Servain, 1888
- Subgenus Henslowiana (Supiniana) Korniushin, 1996 accepted as Henslowiana Servain, 1888
- Species Henslowiana (Supiniana) baudonii (Clessin, 1873) accepted as Euglesa supina (A. Schmidt, 1851)
- Species Henslowiana (Supiniana) conica (Baudon, 1857) accepted as Euglesa supina (A. Schmidt, 1851)
- Species Henslowiana (Supiniana) infirmicostata (Pirogov & Starobogatov, 1974) accepted as Euglesa supina (A. Schmidt, 1851)
- Species Henslowiana (Supiniana) supina (A. Schmidt, 1850) accepted as Euglesa supina (A. Schmidt, 1851)
- Species Henslowiana (Supiniana) tenuicostulata (Krivosheina, 1978) accepted as Euglesa supina (A. Schmidt, 1851)
- Species Henslowiana nordenskioldi (Clessin, 1877) accepted as Euglesa lilljeborgii (Clessin, 1886)
- Genus Hiberneuglesa Starobogatov, 1983 accepted as Euglesa (Hiberneuglesa) Starobogatov, 1983
- Genus Hindupisidium Vinarski & Bespalaya, 2023 (3)
- Genus Lacustrina Sterki, 1916 accepted as Pisidium (Lacustrina) Sterki, 1916
- Genus Limosina Clessin, 1872 accepted as Eupera Bourguignat, 1854
- Genus Musculium Link, 1807 accepted as Sphaerium (Musculium) Link, 1807
- Genus Neopisidium Odhner, 1921 accepted as Pisidium (Neopisidium) Odhner, 1921
- Genus Nucleocyclas Alimov & Starobogatov, 1968 accepted as Sphaerium Scopoli, 1777
- Genus Nux Humphrey, 1797 accepted as Sphaerium Scopoli, 1777
- Genus Odhneripisidium Kuiper, 1962 (36)
- Genus Paramusculium Alimov & Starobogatov, 1968 accepted as Sphaerium (Musculium) Link, 1807
- Genus Parasphaerium Alimov & Starobogatov, 1968
- Genus Phymesoda Rafinesque, 1820 accepted as Musculium Link, 1807
- Genus Pisidium C. Pfeiffer, 1821 (108)
- Genus Primella Cooper, 1892 accepted as Sphaerium Scopoli, 1777
- Genus Pseudeupera Germain, 1913 accepted as Euglesa (Pseudeupera) Germain, 1913
- Genus Pseudocorbicula Dautzenberg, 1908 accepted as Sphaerium Scopoli, 1777
- Genus Rivicoliana Servain, 1888 accepted as Sphaerium (Amesoda) Rafinesque, 1820
- Genus Roseana Fagot, 1892 accepted as Euglesa (Casertiana) Servain, 1888
- Genus Shadinicyclas Starobogatov & Korniushin, 1986 accepted as Sphaerium (Amesoda) Rafinesque, 1820
- Genus Sphaeriastrum Bourguignat, 1854 accepted as Sphaerium Scopoli, 1777
- Genus Sphaerium Scopoli, 1777 (182)
- Genus Tetragonocyclas Pirogov & Starobogatov, 1974 accepted as Euglesa (Cingulipisidium) Pirogov & Starobogatov, 1974
- Genus Zecyclas Starobogatov, 1968 accepted as Sphaerium (Sphaerinova) Iredale, 1943
- Tribe Euglesini Pirogov & Starobogatov, 1974 accepted as Sphaeriinae Deshayes, 1855 (1820)
- Genus Amesoda Rafinesque, 1820 accepted as Sphaerium (Amesoda) Rafinesque, 1820
- Genus Cordula Leach, 1852 accepted as Pisidium C. Pfeiffer, 1821
- Genus Megasphaerioides Komatsu, J.-H. Chen & Q.-F. Wang, 2003 † (1)
- Genus Pera Leach, 1831 accepted as Pisidium C. Pfeiffer, 1821
- Genus Pisum Megerle von Mühlfeld, 1811
- Genus Protosphaerium Hocknull, 2000 † (2)
- Genus Sphaericoncha C. M. Kolesnikov, 1980 † (4)
- Genus Sphaerinova Iredale, 1943 accepted as Musculium (Sphaerinova) Iredale, 1943
- Genus Sphaerioides J.-S. Yu & K. Zhang, 1982 † (3)
- Genus Tetoriunio Koarai & Matsukawa, 2016 † accepted as Megasphaerioides Komatsu, J.-H. Chen & Q.-F. Wang, 2003 †
- Family Starobogatoviconchidae Zykin †
- Order Venerida (2 821)
- Superfamily Cyamioidea G. O. Sars, 1878 (98)
- Superfamily Gaimardioidea Hedley, 1916 accepted as Cyamioidea G. O. Sars, 1878
- Superfamily Galeommatacea accepted as Galeommatoidea J. E. Gray, 1840
- Superfamily Grammysioidea S. A. Miller, 1877 † (90)
- Superfamily Kalenteroidea Marwick, 1953 † (39)
- Superfamily Mactracea accepted as Mactroidea Lamarck, 1809
- Order Anomalodesmacea accepted as Anomalodesmata
- Order Euheterodonta incertae sedis (27)
- Order Pholadomyida represented as Anomalodesmata
- Family Lipanellidae T. M. Sánchez, 2005 † (4)
- Family Rhaetidiidae Dominici & Danise, 2024 † (2)
- Subterclass Heterodonta
- Subterclass Palaeoheterodonta (4 072)
- Superorder Heteroconchia incertae sedis † (1)
- Infraclass Pteriomorphia (6 658)
- Subclass Bivalvia incertae sedis (7)
- Subclass Palaeotaxodonta accepted as Nuculida
- Subclass Paleoheterodonta accepted as Palaeoheterodonta
- Subclass Protobranchia (1 365)
- Infraclass Cryptodonta † (342)
- Class Caudofoveata (143)
- Class Cephalopoda (1 834)
- Class Conchifera accepted as Bivalvia
- Class Cricoconarida † (1)
- Class Gastropoda (102 697)
- Class Lamellibranchiata accepted as Bivalvia
- Class Loricata accepted as Polyplacophora
- Class Mollusca incertae sedis † (372)
- Class Monoplacophora (229)
- Class Pelecypoda accepted as Bivalvia
- Class Polyplacophora (1 377)
- Class Polyplaxiphora accepted as Polyplacophora
- Class Rostroconchia † (64)
- Class Scaphopoda (752)
- Class Solenoconchia accepted as Scaphopoda
- Class Solenogastres (313)
- Subclass Chaetodermomorpha accepted as Caudofoveata