Between brackets is the number of accepted species

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- Mollusca (133 313)
- Subphylum Aculifera
- Subphylum Conchifera
- Subphylum Placophora accepted as Polyplacophora
- Superclass Aplacophora
- Class Amphineura accepted as Aculifera
- Class Bivalvia (25 086)
- Class Caudofoveata (143)
- Class Cephalopoda (1 921)
- Subclass Coleoidea (1 150)
- Subclass Endoceratia † (34)
- Subclass Multiceratia † (307)
- Order Bisonoceratida † (36)
- Order Cyrtocerinida †
- Order Discosorida † (11)
- Order Ellesmeroceratida † (185)
- Order Oncoceratida † (75)
- Superfamily Rutoceratoidea Hyatt, 1884 † (10)
- Family Acleistoceratidae Flower, 1950 † (2)
- Family Allumettoceratidae Flower, 1946 † accepted as Tripteroceratidae Flower, 1941 †
- Family Archiacoceratidae C. Teichert, 1939 † (1)
- Family Brevicoceratidae Flower, 1945 † (4)
- Genus Brevicoceras Flower, 1938 † (2)
- Genus Cerovoceras Kröger, 2008 † (2)
- Species Cerovoceras brevidomus Kröger, 2008 †
- Species Cerovoceras fatimi Kröger, 2008 †
- Family Diestoceratidae Foeste, 1926 † (8)
- Family Hemiphragmoceratidae Foeste, 1926 †
- Family Jovellaniidae Foord, 1888 † (5)
- Family Karoceratidae C. Teichert, 1939 † (3)
- Family Nothoceratidae Fischer, 1882 † (2)
- Family Oncoceratidae Hyatt, 1884 † (31)
- Family Oonoceratidae Flower, 1942 † (2)
- Family Phthanoncoceratidae D. H. Evans & A. H. King, 1990 † (5)
- Family Poterioceratidae Foord, 1888 †
- Family Trimeroceratidae Zittel, 1900 †
- Family Tripteroceratidae Flower, 1941 † (1)
- Family Valcouroceratidae Flower, 1946 † (1)
- Genus Gomphoceras J. de C. Sowerby, 1839 †
- Genus Graciloceras Flower, 1943 †
- Genus Gyroceras Owen, 1844 †
- Subclass Nautiloida (171)
- Subclass Orthoceratia † (216)
- Subclass Plectronoceratia † (16)
- Subclass Tarphyceratia † (27)
- Class Conchifera accepted as Bivalvia
- Class Cricoconarida † (1)
- Class Gastropoda (103 049)
- Class Lamellibranchiata accepted as Bivalvia
- Class Loricata accepted as Polyplacophora
- Class Mollusca incertae sedis † (372)
- Class Monoplacophora (229)
- Class Pelecypoda accepted as Bivalvia
- Class Polyplacophora (1 381)
- Class Polyplaxiphora accepted as Polyplacophora
- Class Rostroconchia † (64)
- Class Scaphopoda (754)
- Class Solenoconchia accepted as Scaphopoda
- Class Solenogastres (313)
- Subclass Chaetodermomorpha accepted as Caudofoveata