Between brackets is the number of accepted species

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- Mollusca (132 754)
- Subphylum Aculifera
- Subphylum Conchifera
- Subphylum Placophora accepted as Polyplacophora
- Superclass Aplacophora
- Class Amphineura accepted as Aculifera
- Class Bivalvia (24 992)
- Subclass Autobranchia (23 278)
- Infraclass Heteroconchia (16 634)
- Subterclass Archiheterodonta (1 205)
- Subterclass Euheterodonta (11 356)
- Superorder Anomalodesmata (987)
- Superorder Imparidentia (10 336)
- Order Adapedonta (260)
- Order Cardiida (3 055)
- Order Galeommatida (791)
- Order Gastrochaenida (43)
- Order Hiatellida represented as Adapedonta
- Order Hippuritida † (321)
- Order Lucinida (997)
- Order Megalodontida † (141)
- Order Modiomorphida † (94)
- Order Myacea accepted as Myida
- Order Myida (924)
- Suborder Myina represented as Myida
- Superfamily Dreissenoidea J. E. Gray, 1840 (304)
- Superfamily Myoidea Lamarck, 1809 (309)
- Family Amotapidae Olsson, 1928 † accepted as Raetomyidae R. B. Newton, 1919 †
- Family Corbulidae Lamarck, 1818 (233)
- Family Erodonidae Winckworth, 1932 accepted as Erodoninae Winckworth, 1932
- Family Myidae Lamarck, 1809 (74)
- Subfamily Cryptomyinae T. Habe, 1977 (49)
- Subfamily Myinae Lamarck, 1809 (23)
- Genus Mya Linnaeus, 1758 (12)
- Genus Platyodon Conrad, 1837 (2)
- Genus Tugonella Jousseaume, 1891 (2)
- Genus Tugonia J. E. Gray, 1842 (7)
- Subgenus Tugonia (Distugonia) Iredale, 1936 represented as Tugonia J. E. Gray, 1842
- Species Tugonia (Distugonia) decurtata (A. Adams, 1851) represented as Tugonia decurtata (A. Adams, 1851)
- Subgenus Tugonia (Tugonia) J. E. Gray, 1842 represented as Tugonia J. E. Gray, 1842
- Species Tugonia adenensis Jousseaume, 1891 accepted as Tugonia nobilis Reeve, 1863
- Species Tugonia anatina (Gmelin, 1791)
- Species Tugonia compressa Reeve, 1863 accepted as Tugonia anatina (Gmelin, 1791)
- Species Tugonia decurtata (A. Adams, 1851)
- Species Tugonia divaricata Reeve, 1863 accepted as Tugonella divaricata (Reeve, 1863)
- Species Tugonia guineensis Reeve, 1863 accepted as Tugonia anatina (Gmelin, 1791)
- Species Tugonia huanghaiensis F.-S. Xu, 1987
- Species Tugonia inopinata (Iredale, 1936)
- Species Tugonia lorioli P. Oppenheim, 1906 †
- Species Tugonia nobilis Reeve, 1863
- Species Tugonia semisulcata Reeve, 1863 accepted as Tugonia nobilis Reeve, 1863
- Species Tugonia sinensis F.-S. Xu, 1987 accepted as Cryptomya sinensis (F.-S. Xu, 1987)
- Species Tugonia siphonata Reeve, 1863 accepted as Tugonia anatina (Gmelin, 1791)
- Species Tugonia zitteli P. Oppenheim, 1906 †
- Subfamily Spheniinae F. R. Bernard, 1983 accepted as Cryptomyinae T. Habe, 1977
- Genus Arenaria Megerle von Mühlfeld, 1811 accepted as Scrobicularia Schumacher, 1815
- Genus Arenomya Winckworth, 1930 accepted as Mya Linnaeus, 1758
- Genus Cryptodonta P. P. Carpenter, 1864 accepted as Platyodon Conrad, 1837
- Genus Distugonia Iredale, 1936 accepted as Tugonia (Distugonia) Iredale, 1936
- Genus Janschinella Merklin, 1961 † (2)
- Genus Myacites Schlotheim, 1820 † accepted as Mya Linnaeus, 1758
- Genus Sphaenia [sic] accepted as Sphenia W. Turton, 1822
- Genus Sphena [sic] accepted as Sphenia W. Turton, 1822
- Genus Tugonia Récluz, 1846 accepted as Tugonia J. E. Gray, 1842
- Genus Tyleria H. Adams & A. Adams, 1854 accepted as Sphenia W. Turton, 1822
- Family Pleurodesmatidae Cossmann, 1909 † (1)
- Family Raetomyidae R. B. Newton, 1919 † (1)
- Superfamily Pholadacea accepted as Pholadoidea Lamarck, 1809
- Superfamily Pholadoidea Lamarck, 1809 (294)
- Superfamily Pleuromyoidea Zittel, 1895 † (17)
- Family Aloididae Thiele, 1934 accepted as Corbulidae Lamarck, 1818
- Family Myacidae accepted as Myidae Lamarck, 1809
- Order Sphaeriida (662)
- Order Venerida (2 821)
- Superfamily Cyamioidea G. O. Sars, 1878 (98)
- Superfamily Gaimardioidea Hedley, 1916 accepted as Cyamioidea G. O. Sars, 1878
- Superfamily Galeommatacea accepted as Galeommatoidea J. E. Gray, 1840
- Superfamily Grammysioidea S. A. Miller, 1877 † (90)
- Superfamily Kalenteroidea Marwick, 1953 † (39)
- Superfamily Mactracea accepted as Mactroidea Lamarck, 1809
- Order Anomalodesmacea accepted as Anomalodesmata
- Order Euheterodonta incertae sedis (27)
- Order Pholadomyida represented as Anomalodesmata
- Family Lipanellidae T. M. Sánchez, 2005 † (4)
- Family Rhaetidiidae Dominici & Danise, 2024 † (2)
- Subterclass Heterodonta
- Subterclass Palaeoheterodonta (4 072)
- Superorder Heteroconchia incertae sedis † (1)
- Infraclass Pteriomorphia (6 644)
- Subclass Bivalvia incertae sedis (7)
- Subclass Palaeotaxodonta accepted as Nuculida
- Subclass Paleoheterodonta accepted as Palaeoheterodonta
- Subclass Protobranchia (1 365)
- Infraclass Cryptodonta † (342)
- Class Caudofoveata (143)
- Class Cephalopoda (1 832)
- Class Conchifera accepted as Bivalvia
- Class Cricoconarida † (1)
- Class Gastropoda (102 679)
- Class Lamellibranchiata accepted as Bivalvia
- Class Loricata accepted as Polyplacophora
- Class Mollusca incertae sedis † (372)
- Class Monoplacophora (229)
- Class Pelecypoda accepted as Bivalvia
- Class Polyplacophora (1 377)
- Class Polyplaxiphora accepted as Polyplacophora
- Class Rostroconchia † (64)
- Class Scaphopoda (752)
- Class Solenoconchia accepted as Scaphopoda
- Class Solenogastres (313)
- Subclass Chaetodermomorpha accepted as Caudofoveata