Between brackets is the number of accepted species

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- Mollusca (132 851)
- Subphylum Aculifera
- Subphylum Conchifera
- Subphylum Placophora accepted as Polyplacophora
- Superclass Aplacophora
- Class Amphineura accepted as Aculifera
- Class Bivalvia (25 013)
- Subclass Autobranchia (23 299)
- Infraclass Heteroconchia (16 639)
- Subterclass Archiheterodonta (1 208)
- Subterclass Euheterodonta (11 358)
- Subterclass Heterodonta
- Subterclass Palaeoheterodonta (4 072)
- Order Trigoniida (1 482)
- Superfamily Megatrigonioidea van Hoepen, 1929 † (336)
- Superfamily Myophorelloidea T. Kobayashi, 1954 † (376)
- Superfamily Pseudocardinioidea Martinson, 1961 † (176)
- Superfamily Trigonioidea Lamarck, 1819 (350)
- Family Costatoriidae Newell & Boyd, 1975 † accepted as Myophoriidae Bronn, 1849 †
- Family Eoastartidae Newell & Boyd, 1975 † accepted as Eoastartinae Newell & Boyd, 1975 †
- Family Eoschizodidae Newell & Boyd, 1975 † (6)
- Family Erugoniidae McRoberts, 2017 † (5)
- Family Groeberellidae E. Pérez, Reyes & S. E. Damborenea, 1995 † (1)
- Family Ladinomyidae Prinoth & Posenato, 2023 † (1)
- Family Myophoriidae Bronn, 1849 † (71)
- Genus Acanomyphoria F.-X. Guo, 1985 † (1)
- Genus Atalantia G. Termier & Verriez, 1974 † (1)
- Genus Costatoria L. Waagen, 1906 † (16)
- Genus Cryptina Boué, 1835 † accepted as Myophoria Bronn, 1834 †
- Genus Dolabra McCoy, 1844 †
- Genus Elegantinia L. Waagen, 1906 † (5)
- Genus Flabelliphoria Allasinaz, 1966 † (1)
- Genus Gruenewaldia Wöhrmann, 1889 † (5)
- Genus Guizhoumyophoria Z.-J. Fang, 2009 † (1)
- Genus Heminajas Neumayr, 1891 † (5)
- Species Heminajas fissidentata (Wöhrmann, 1889) †
- Species Heminajas forulata C.-Z. Chen, Q.-H. Ma & Z.-M. Zhang, 1974 †
- Species Heminajas geyeri L. Waagen, 1907 †
- Species Heminajas haastiana Wilckens, 1927 † accepted as Haastina haastiana (Wilckens, 1927) †
- Species Heminajas puerensis F.-X. Guo, 1985 †
- Species Heminajas qinghaiensis Y.-J. Lu, 1981 †
- Species Heminajas sibirica Kiparisova, 1937 †
- Species Heminajas woehrmanni L. Waagen, 1907 †
- Species Heminajas xiangyunensis F.-X. Guo, 1985 †
- Genus Liotrigonia L. R. Cox, 1952 † (5)
- Genus Lyriomyophoria T. Kobayashi, 1954 † accepted as Elegantinia L. Waagen, 1906 †
- Genus Myophoria Bronn, 1834 † (12)
- Genus Neoschizodus Giebel, 1855 † (15)
- Genus Niobe de Koninck, 1873 † accepted as Protoschizodus de Koninck, 1885 †
- Genus Okunominetania Ichikawa, 1954 †
- Genus Paraschizodus Newell & Boyd, 1975 † (2)
- Genus Quadratia H.-F. Yin, 1974 † accepted as Guizhoumyophoria Z.-J. Fang, 2009 †
- Genus Rhenania L. Waagen, 1906 †
- Genus Sichuantrigonia Z.-H. Gou, 1993 † (1)
- Genus Trigomyophoria T. Kobayashi, 1954 † accepted as Gruenewaldia Wöhrmann, 1889 †
- Genus Trigonella Hehl, 1842 † accepted as Myophoria Bronn, 1834 †
- Genus Trigonellites Schlotheim, 1813 † accepted as Myophoria Bronn, 1834 †
- Genus Trionychodia F.-X. Guo, 1988 † accepted as Yangella X.-Z. Liu & D.-Y. Gu, 1988 †
- Genus Utetrigonia Petuch, 1988 † (1)
- Genus Yangella X.-Z. Liu & D.-Y. Gu, 1988 †
- Family Prosogyrotrigoniidae T. Kobayashi, 1954 † (7)
- Family Scaphellinidae Newell & Ciriacks, 1962 † (3)
- Family Schizodidae Newell & Boyd, 1975 † (41)
- Family Sinodoridae Pojeta & R.-J. Zhang, 1984 † accepted as Sinodorinae Pojeta & R.-J. Zhang, 1984 †
- Family Trigoniidae Lamarck, 1819 (215)
- Superfamily Trigonioidoidea L. R. Cox, 1952 † (226)
- Superfamily Trigonodoidea Modell, 1942 † (18)
- Order Unionida (2 579)
- Family Lyrodesmatidae P. Fischer, 1886 † (8)
- Family Pseudarcidae Scarlato & Starobogatov, 1979 † (3)
- Family Thoraliidae N. J. Morris, 1980 †
- Superorder Heteroconchia incertae sedis † (1)
- Infraclass Pteriomorphia (6 660)
- Subclass Bivalvia incertae sedis (7)
- Subclass Palaeotaxodonta accepted as Nuculida
- Subclass Paleoheterodonta accepted as Palaeoheterodonta
- Subclass Protobranchia (1 365)
- Infraclass Cryptodonta † (342)
- Class Caudofoveata (143)
- Class Cephalopoda (1 834)
- Class Conchifera accepted as Bivalvia
- Class Cricoconarida † (1)
- Class Gastropoda (102 753)
- Class Lamellibranchiata accepted as Bivalvia
- Class Loricata accepted as Polyplacophora
- Class Mollusca incertae sedis † (372)
- Class Monoplacophora (229)
- Class Pelecypoda accepted as Bivalvia
- Class Polyplacophora (1 377)
- Class Polyplaxiphora accepted as Polyplacophora
- Class Rostroconchia † (64)
- Class Scaphopoda (752)
- Class Solenoconchia accepted as Scaphopoda
- Class Solenogastres (313)
- Subclass Chaetodermomorpha accepted as Caudofoveata