Between brackets is the number of accepted species

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- Mollusca (133 359)
- Subphylum Aculifera
- Subphylum Conchifera
- Subphylum Placophora accepted as Polyplacophora
- Superclass Aplacophora
- Class Amphineura accepted as Aculifera
- Class Bivalvia (25 098)
- Subclass Autobranchia (23 370)
- Infraclass Heteroconchia (16 695)
- Subterclass Archiheterodonta (1 219)
- Subterclass Euheterodonta (11 399)
- Subterclass Heterodonta
- Subterclass Palaeoheterodonta (4 076)
- Order Trigoniida (1 484)
- Superfamily Megatrigonioidea van Hoepen, 1929 † (336)
- Superfamily Myophorelloidea T. Kobayashi, 1954 † (378)
- Superfamily Pseudocardinioidea Martinson, 1961 † (176)
- Superfamily Trigonioidea Lamarck, 1819 (350)
- Family Costatoriidae Newell & Boyd, 1975 † accepted as Myophoriidae Bronn, 1849 †
- Family Eoastartidae Newell & Boyd, 1975 † accepted as Eoastartinae Newell & Boyd, 1975 †
- Family Eoschizodidae Newell & Boyd, 1975 † (6)
- Family Erugoniidae McRoberts, 2017 † (5)
- Family Groeberellidae E. Pérez, Reyes & S. E. Damborenea, 1995 † (1)
- Family Ladinomyidae Prinoth & Posenato, 2023 † (1)
- Family Myophoriidae Bronn, 1849 † (71)
- Family Prosogyrotrigoniidae T. Kobayashi, 1954 † (7)
- Family Scaphellinidae Newell & Ciriacks, 1962 † (3)
- Family Schizodidae Newell & Boyd, 1975 † (41)
- Subfamily Eoastartinae Newell & Boyd, 1975 † (4)
- Subfamily Schizodinae Newell & Boyd, 1975 † (32)
- Genus Cytherodon J. Hall & Whitfield, 1873 † accepted as Schizodus W. King, 1845 †
- Genus Heteroschizodus Newell & Boyd, 1975 † (1)
- Species Heteroschizodus macomoides Newell & Boyd, 1975 †
- Genus Lyroschizodus Newell & Boyd, 1975 † (2)
- Genus Prisconaia Conrad, 1867 † accepted as Schizodus W. King, 1845 †
- Genus Procostatoria Newell & Boyd, 1975 † (3)
- Genus Protoschizodus de Koninck, 1885 † accepted as Schizodus W. King, 1845 †
- Genus Schizodus W. King, 1845 † (25)
- Genus Silurozodus Liljedahl, 1992 † (1)
- Subfamily Sinodorinae Pojeta & R.-J. Zhang, 1984 † (5)
- Family Sinodoridae Pojeta & R.-J. Zhang, 1984 † accepted as Sinodorinae Pojeta & R.-J. Zhang, 1984 †
- Family Trigoniidae Lamarck, 1819 (215)
- Superfamily Trigonioidoidea L. R. Cox, 1952 † (226)
- Superfamily Trigonodoidea Modell, 1942 † (18)
- Order Unionida (2 581)
- Family Lyrodesmatidae P. Fischer, 1886 † (8)
- Family Pseudarcidae Scarlato & Starobogatov, 1979 † (3)
- Family Thoraliidae N. J. Morris, 1980 †
- Superorder Heteroconchia incertae sedis † (1)
- Infraclass Pteriomorphia (6 675)
- Subclass Bivalvia incertae sedis (7)
- Subclass Palaeotaxodonta accepted as Nuculida
- Subclass Paleoheterodonta accepted as Palaeoheterodonta
- Subclass Protobranchia (1 379)
- Infraclass Cryptodonta † (342)
- Class Caudofoveata (143)
- Class Cephalopoda (1 921)
- Class Conchifera accepted as Bivalvia
- Class Cricoconarida † (1)
- Class Gastropoda (103 083)
- Class Lamellibranchiata accepted as Bivalvia
- Class Loricata accepted as Polyplacophora
- Class Mollusca incertae sedis † (372)
- Class Monoplacophora (229)
- Class Pelecypoda accepted as Bivalvia
- Class Polyplacophora (1 381)
- Class Polyplaxiphora accepted as Polyplacophora
- Class Rostroconchia † (64)
- Class Scaphopoda (754)
- Class Solenoconchia accepted as Scaphopoda
- Class Solenogastres (313)
- Subclass Chaetodermomorpha accepted as Caudofoveata